2021 term 1 Assessment 3 “Business Intelligence using Big Data.” Practical and Written Assignment final Assignment of CQU

COIT20253: Business Intelligence using Big Data.

Assessment 3

“Business Intelligence using Big Data.”

Practical and Written Assignment

 

 

 Executive Summary

This report contains big data statistics in health care and all the use cases and models that are applicable in the field of the medical sector. It contains the analysis of data and their use in real-world scenarios. We have analyzed the data using different tools to classify the data from patients, medical staff and observed that these data play an important role for different tools. We have different architectures that classify the data and the models on which the data are classified upon.

The examined apparatuses are useful to the specialists for conveying compelling medical care structures that work with start to finish medical services arrangements by improving patient results with the approach of huge information. Different websites and journal articles were visited to make this report and different points were summarized to make the report.

Table of Contents

1.0 Introduction

2.0 Big Data Use Cases

2.1 Prescriptive examination

2.2 Prescient examination and speedy analysis

2.3 Finance Management

2.4 Clinical exploration activities

2.5 Inventive plans of action

2.6 Forecast of mass flare-ups

2.7 Telemedicine

2.8 Constant wellbeing checking

3.0 Critical Analysis of Big Data Technologies

3.1 Hadoop

3.2 Apache Spark

3.3 Spark Seq

3.4        SAMQA

3.5 Workmanship

3.5 DistMap

3.6 SeqWare

3.7 Deluge

3.8        Hydra

3.9        BlueSNP

3.10 Myrna

3.11 Power BI

4.0 Use of Big Data tools on the dataset.

4.1 Data Integration Tools

4.2 Adaptable looking and handling tools

4.3 Machine Learning Tools

4.4. Real-time and stream data processing tools.

5.0 Critical Analysis of the Output

5.1 Linguamatics

5.2 IBM Watson

5.3 Analysis of the Dataset

6.0 Big data Architecture Solution

6.1 Information Retrieval and Aggregation Module

6.2 Communication/Integration APIs

6.3 Information Processing and Analysis Module

6.4 Pre-processing Engine

6.5 Data Warehouses

6.6 Analytics Engine

7.0 Conclusion

References.

 

 

 

1.0 Introduction

Data has been the way into a superior association and new turns of events. The more data we have, the more ideally, we can sort out ourselves to convey the best results. One such unique social need is medical services. Like other industries, medical care associations are delivering information at a huge rate that presents numerous benefits and difficulties simultaneously. In this report, we examine the fundamentals of huge information including its administration, investigation, and future possibilities particularly in the medical services area (Dash et al., 2019).

2.0 Big Data Use Cases

 

The critical difference between conventional methodologies and AI is that in AI, a model gains from models instead of being modified with rules. For a given errand, models are given as data sources (called highlights) and yields (called names). For example, digitized slides read by pathologists are changed over to highlights (pixels of the slides) and marks (e.g., data demonstrating that a slide contains proof of changes showing malignant growth). (Alvin, R., Dean, J. & Isaac, K. 2019).

Figure: Strategy Document

Figure: Preparing to build a model

Source: (Alvin, R., Dean, J. & Isaac, K. 2019)

With the information gathered during routine consideration, AI could be utilized to distinguish likely determinations during a clinical visit and bring issues to light of conditions that are probably going to show later. However, such methodologies have constraints. Less gifted clinicians may not inspire the data vital for a model to help them seriously, and the conclusions that the models are worked from might be temporary or incorrect, might be conditions that don’t show side effects (and hence may prompt overdiagnosis), might be impacted by billing, or may just not be recorded.

Models have effectively been effectively-prepared to reflectively distinguish anomalies across an assortment. Notwithstanding, just a predetermined number of imminent preliminaries include the utilization of AI models as a feature of a clinician’s ordinary course of work

Figure: Training a Model for the prediction of the diseases

Source: (Alvin, R., Dean, J. & Isaac, K. 2019)

Figure: Evaluating a model

Source: (Alvin, R., Dean, J. & Isaac, K. 2019)

In an enormous medical care framework with a huge number of doctors treating a huge number of patients, there is variety in when and why patients present for care and how patients with comparable conditions are dealt with. A clear application is to analyze what is endorsed at the place of care with what a model predicts would be recommended, and errors could be hailed for audit (e.g., different clinicians will in general request another option treatment that reflects new rules). (Alvin, R., Dean, J. & Isaac, K. 2019).

Big Data Has different use cases.

·       Illustrative investigation

·       Demonstrative investigation

·       Prescient examination

2.1 Prescriptive examination

As should be obvious, this is a sort of cycle that beginnings with the assurance of the issue to the arrangements on the best way to stay away from these difficulties later. Presently, ample opportunity has already past to glance through the techniques for utilizing Big Data investigation in the medical services field more decisively (ReferralMD, 2019).

2.2 Prescient examination and speedy analysis

Specialists from CSS Insight have asserted that the expense of wearable gadgets can become $25 billion before the finish of 2019. These days individuals use such gadgets as wellness trackers and smartwatches to gather and dissect data about their heartbeat and active work. In addition, there is a chance for the customers to send all gathered information straightforwardly to their family specialist.

2.3 Finance Management

 

AI can assist us with breaking down bills and assets. Therefore, we are offered a chance to lessen the number of slip-ups and misappropriations. Considering patients’ monetary capacities and their interest in assistance Big Data permits shaping value plans.

2.4 Clinical exploration activities

Clearly, this part is about prescient demonstrating in the advancement of new cures. Enormous Data devices and factual calculations can oversee clinical preliminaries. In this way, it’s simpler to select individuals to test new medications and discover better match medicines to singular patients. Incidentally, this innovation permits diminishing preliminary disappointments and speeding new medicines to advertise. Breaking down clinical preliminaries and patients records offer a chance to find unfavorable impacts before drugs arrive at the market.

2.5 Inventive plans of action

 

Obviously, Big information in medical care can bring you to benefit for the business. Information aggregators can give outsiders examined and gathered information blocks. There are a few thoughts. For example, if a drug organization needs to see or utilize clinical records of individuals that took a specific medication, it very well might be feasible to buy this data (ReferralMD, 2019).

2.6 Forecast of mass flare-ups

 

Large Data permits researchers to fabricate social models of populace wellbeing. As per them, specialists can make prescient models of flare-ups progress. These calculations can dissect infection episodes. Accordingly, specialists are offered a chance to make even more precisely focused on antibodies quicker.

2.7 Telemedicine

The advancement of online video gatherings, cell phones, remote gadgets, and wearables offers telemedicine a chance to furnish patients with clinical benefits on distance. These days medical services advancements are capable not exclusively to give an essential finding yet additionally to counsel patients and screen their wellbeing..

2.8 Constant wellbeing checking

 

Getting back to the wearable gadgets like wellness trackers and wristbands, it is imperative to underline their capacity to screen the soundness of their clients in a constant mode and give specialists data and changes. In this way, information from everything sensors can be investigated right away and, if something is not right, an alarm will be naturally shipped off the specialist or another trained professional.

3.0 Critical Analysis of Big Data Technologies

 

The data accumulated using the sensors can be made available on a limit cloud with pre-presented programming mechanical assemblies made by logical gadget creators. These gadgets would have data mining and ML limits made by AI experts to change over the information set aside as data into data. Upon execution, it would improve the capability of acquiring, taking care of, analyzing, and view of enormous data from clinical consideration. (Alvin, R., Dean, J. & Isaac, K. 2019).

The most notable stages for working the item framework that helps colossal data assessment are high power figuring bunches got to through cross-section preparing structures. Disseminated registering is such a structure that has virtualized limit advances and offers reliable kinds of help. It offers high unflinching quality, flexibility, and independence close by ubiquitous access, dynamic resource exposure, and composability. (Alvin, R., Dean, J. & Isaac, K. 2019).

3.1 Hadoop

 

Stacking a lot of (large) information into the memory of even the most impressive of processing groups is certifiably not a productive method to work with enormous information. Consequently, the best coherent methodology for breaking down gigantic volumes of complex enormous information is to appropriate and handle it in equal on various hubs.

When working with hundreds or thousands of hubs, one needs to deal with issues like how to parallelize the calculation, appropriate the information, and handle disappointments. One of the most famous open sources circulated applications for this design is Hadoop. Hadoop executes MapReduce calculation for preparing and creating enormous datasets. It productively parallelizes the calculation, handles disappointments, and timetables between machine correspondence across huge scope groups of machines. (Alvin, R., Dean, J. & Isaac, K. 2019).

3.2 Apache Spark

Apache Spark is another open-source option in contrast to Hadoop. It is a bound together motor for appropriated information preparing that incorporates more significant level libraries for supporting SQL questions (Spark SQL), streaming information (Spark Streaming), AI (MLlib), and chart handling (GraphX). These libraries help in expanding designer usefulness on the grounds that the programming interface requires lesser coding endeavors and can be flawlessly consolidated to make more kinds of complex calculations. By carrying out Resilient conveyed Datasets (RDDs), in-memory preparation of information is upheld that can make Spark about 100× quicker than Hadoop in the multi-pass investigation (on more modest datasets). (Alvin, R., Dean, J. & Isaac, K. 2019).

Figure: Big Data Analytics Workflow

Source: Dash et al., 2019.

 

Figure: Integrating Data

Source: Dash et al., 2019

3.3 Spark Seq

An effective and cloud-prepared stage dependent on Apache Spark system and Hadoop library that is utilized for examinations of genomic information for intelligent genomic information investigation with nucleotide exactness.

3.4  SAMQA

Distinguishes mistakes and guarantees the nature of huge scope genomic information. This device was initially worked for the National Institutes of Health Cancer Genome Atlas undertaking to distinguish and report mistakes including arrangement/map [SAM] design blunder and void peruses.

3.5 Workmanship

 It can re-enact profiles of reading mistakes and read lengths for information acquired utilizing high throughput sequencing stages including Solid and Illumina stages.

3.5  DistMap

Another toolbox utilized for conveyed short-read planning dependent on the Hadoop group that means to cover a more extensive scope of sequencing applications. For example, one of its applications to be specific the BWA mapper can perform 500 million read sets in around 6 h, roughly multiple times quicker than a regular single-hub mapper.

3.6 SeqWare

Question motor dependent on Apache HBase information base framework that empowers access for enormous scope entire genome datasets by incorporating genome programs and devices.

3.7 Deluge

An equal registering model is used in genome planning trials to improve the adaptability of perusing huge sequencing information.

3.8 Hydra

Utilizes the Hadoop-disseminated registering system for handling huge peptide and spectra information bases for proteomics datasets. This apparatus is equipped for performing 27 billion peptide scorings in under 60 min on a Hadoop group.

3.9 BlueSNP

R bundle dependent on Hadoop stage utilized for genome-wide affiliation contemplates (GWAS) investigation, essentially pointing to the measurable readouts to acquire huge relationship between genotype–aggregate datasets. The productivity of this device is assessed to dissect 1000 aggregates on 106 SNPs in 104 people in a length of thirty minutes.

3.10       Myrna

 The cloud-based pipeline gives data on the articulation level contrasts of qualities, including reading arrangements, information standardization, and factual displaying.

3.11 Power BI

 

The motivation behind BI is to help in controlling the tremendous progression of business data inside and outside of the association by first distinguishing and afterward handling the data into consolidated and valuable administrative information and insight. BI assists associations with having the information and make determinations from significant information on business main considerations like guidelines and varieties underway, request, quality control, and the association’s interior components. A definitive objective of BI in any organization is to settle on ideal choices at all levels of the organization as effectively and rapidly as could be expected (Analytics Vidhya, 2021).

Figure: Data Visualization Using Power BI

 

4.0 Use of Big Data tools on the dataset.

 

Even though differentiated huge information systems are planned towards meeting explicit medical services targets, they, at the end of the day, arrange well for embracing standard structural rules for performing activities, for example, information gathering, pre-preparing, information examination, interpretation, and perception. Because of the space explicit nature of the enormous data healthcare system, experts, for example, information researchers should take the most extreme consideration in choosing fitting apparatuses to be utilized at each degree of the framework plan and execution. (Palanisamy and Thirunavukarasu, 2019).

4.1 Data Integration Tools

 

 The nonstop development in the volume and speed of health care data with broadened information types requests the need of utilizing the administrations of information combination apparatuses for collecting information from disparate sources. Pentaho is a major information scientific stage that provides an end-to-end information mix to help clients for breaking down data from dissimilar sources like social data sets, Hadoop distributions, NoSQL stores, and undertaking applications. It likewise provides adaptable UI for making visual information streams to perform transformation and incorporation of data.

Palantir is an information coordination device that quickly melds data from divergent sources, for example, clinical gadget yields and medical codes. Further, it empowers logical strategies to create models for following a succession of methodology and clinical information measurements to manage medical services determination productively unites organized and unstructured (recordings, pictures, text, sound) healthcare information, numerical models, business rules to assemble predictive and prescriptive models (Palanisamy and Thirunavukarasu, 2019).

4.2 Adaptable looking and handling tools

 

Since a huge volume of clinical notes and unstructured content are commonly utilized by doctors in the medical services area, there is a colossal requirement for looking and ordering devices for performing improved full-text search capacity of clinical information. These tools are used for viable circulated text the board and indexing huge volumes of information in record frameworks like HDFS (Hadoop Distributed File System). Apache is an adaptable, elite indexing system that offers an incredible and precise full-text search facility for an assortment of utilization across various stages.

Google Dremel is a disseminated framework for interactively querying huge informational collections and supports settled information with column storage portrayal. It utilizes staggered execution trees for query preparing. Apache Drill is the Open-Source implementation of Google Dremel.

 

4.3 Machine Learning Tools

 

The medical care industry is sharp in profiting the applications of machine learning instruments to change the plentiful clinical data into noteworthy information by performing prescient and prescriptive investigation considering supporting wise clinical activities.

Sky tree is a general-purpose AI stage that utilizes fake intelligence to produce refined calculations for performing a progressed investigation. It can measure enormous datasets (structured and unstructured) in an exact way without downsampling. A few of its utilization cases are suggestion frameworks, irregularity/exception recognizable proof, prescient examination, grouping and market segmentation, and closeness search. A major information stage that mines and analyses the web, portable, sensor, and online media in Hadoop. AI stage provides a few instruments to perform AI assignments such as classification, relapse, group investigation, irregularity recognition, and association revelation.

4.4. Real-time and stream data processing tools

IoT and sensor gadgets found in the medical services area brief the information handling from broadened information sources to be done in a continuous way. The on-the-fly investigation of medical care information empowers the framework to settle on better choices for customizing patient-situated administrations.

4.5 Visual data analytical tools

Data visualization tools in healthcare help to identify patterns, trends, and deviations that include outliers, clusters, association discovery, and time series analysis for improving clinical delivery and public health policy reports, examination, and dashboards. It gives quick information perception on capacity stages like MongoDB, Cassandra, Redis, Riak, and CouchDB.

5.0 Critical Analysis of the Output

 

IBM Corporation is one of the greatest and experienced parts in this area to give medical care investigation benefits financially. IBM’s Watson Health is an AI stage to share and investigate wellbeing information among clinics, suppliers, and specialists. Additionally, Flatiron Health gives innovation situated administrations in medical services examination uncommonly engaged in malignant growth research.

5.1 Linguamatics

 

It is an NLP put-together calculation that depends with respect to an intelligent book mining calculation (I2E). I2E can separate and examine a wide exhibit of data. Results got utilizing this procedure are ten times quicker than different devices and do not need master information for information understanding. This methodology can give data on hereditary connections and realities from unstructured information. Traditional, ML requires well-curated information as a contribution to producing clean and sifted results. Notwithstanding, NLP when coordinated in EHR or clinical records essentially works with the extraction of perfect and organized data that regularly stays covered up with unstructured information.

 


Figure: Processing Linguistics data’s (Dash et al., 2019)

 

 

 

5.2 IBM Watson

 

This is one of the one-of-a-kind thoughts of the tech-monster IBM that objectives huge information investigation in pretty much every expert area. This stage uses ML and AI-based calculations widely to separate the most extreme data from insignificant information. IBM Watson upholds the routine of incorporating a wide cluster of medical care areas to give significant and organized information While trying to reveal novel medication targets explicitly in the malignancy illness model, IBM Watson and Pfizer have framed useful cooperation to speed up the disclosure of novel safe oncology mixes.

 

Figure: IBM Watson in health care analytics

Source: Dash et al., 2019

IBM Watson in medical services information investigation. Schematic portrayal of the different utilitarian modules in IBM Watson’s huge information medical services bundle. For example, the medication revelation area includes organization of profoundly planned information obtaining and examination inside the range of curating data set to building significant pathways towards explaining novel druggable targets.

5.3 Analysis of the Dataset

Figure: Dataset on Kaggle.com

Source: Kaggle.com

 

Figure 8:  Report Analysis of NSW Cardiology

Source: Australian Institute of Health and Welfare, 2020

 

 

 

 

6.0 Big data Architecture Solution

 

DataCare’s engineering contains three primary modules: the first supervises recovering and amassing the data created in the wellbeing focus or clinic, the subsequent will measure and examine the information, and the third shows the important data in a dashboard, permitting the coordination with outer data frameworks.

6.1 Information Retrieval and Aggregation Module

AdvoCare is the arrangement of equipment and programming instruments intended to oversee interchanges among patients and medical care staff.

• Sensors estimating some current worth or status either in a nonstop or intermittent style and sending it to Buslogic or Advant Control workers; like thermometers or commotion or light sensors.

• Assistance gadgets, for example, fastens or pull controllers that are actioned by the patients and send the help call to the

• Voice and video correspondence frameworks that send and get data from different gadgets or from Jitsi (SIP Communicator), which are taken care of by EasyConf.

• Data securing frameworks worked through graphical client interfaces in gadgets like tablets, e.g., studies or other data frameworks.

• Planned visits: medical care faculty will intermittently visit certain rooms or patients as a piece of a pre-setup arrangement.

• Assistance errands: medical caretakers and nursing colleagues should perform certain errands as a reaction to a help call.

• Patients’ fulfillment: the main help quality emotional metric is the patients’ fulfillment, which is gotten by means of reviews.

6.2 Communication/Integration APIs

Information can be recovered from AdvantCare workers through SOAP web administrations, which will be utilized in those solicitations that require high preparing limits and are stateless. Additionally, the data can be gotten to by means of a REST API, where the calls are performed through HTTP solicitations, and information is traded in JSON-serialized design

Figure: System Architecture to deal with big data

Source: Cheryl Ann Alexander and Lidong Wang, 2017

 

Figure: Big Data Architecture

Source: Baldominos, A., De Rada, F. and Saez, Y., 2018.

6.3 Information Processing and Analysis Module

The Data Processing and Analysis Module is important for a Big Data stage dependent on Apache Spark, which permits a coordinated climate for the turn of events and abuse of continuous gigantic information examination, beating different arrangements like Hadoop MapReduce or Storm, scaling out up to 10,000 hubs, giving issue resistance and permitting inquiries utilizing a SQL-like language.

This module includes four unique frameworks: Preprocessing Engine, Processing Engine, Big Data, and Historic Data Distribution centers, and Analytics Engine.

6.4 Pre-processing Engine

This framework plays out the ETL (Extract-Transform-Load) measures for the AdvantCare information. It will initially speak with AdvantCare utilizing the accessible APIs to recover the information, which will be later changed into an appropriate configuration to be acquainted with the Processing Motor. As a result of the metadata given by AdvantCare, the data can be grouped to facilitate its examination. The standardized and combined information will be put away in MongoDB, the main free and open-source record arranged data set, where assortments will store information for ongoing examination just as notable information to help group examination to register the advancement of various measurements on schedule. This framework runs over the Spark processing bunch and manages information solidification measures for occasionally conglomerating information, too as to help the caution and proposal subsystems.

6.5 Data Warehouses

Information separated by the Pre-processed Engine and improved by the Handling Engine will be put away in the Big Data Warehouse, which will store ongoing data. Also, the Historic Data Warehouse stores accumulated notable information, which will be utilized by the Analytics Motor to distinguish recent fads or pattern shifts for the distinctive quality measurements.

Figure: Data Warehouse

Source: (Health Catalyst, 2014)

6.6 Analytics Engine

This framework runs the clump measures that will apply the factual investigation strategies, just as AI calculations over Realtime Big Data. Alongside the notable information, time arrangement and ARIMA (autoregressive coordinated moving normally) strategies gives an analysis of the worldly conduct of the model. This motor to executes a Bayes-based early alarms framework (EAS) ready to distinguish and foresee a decline in the assistance quality or productivity measurements under a pre-set edge, which will be informed by means of push or email notices.

7.0 Conclusion

 

This report offers the most recent data on Big Data investigation in medical care, anticipating coronary failure, also, fitting clinical treatment to the person. The outcomes will manage suppliers, medical services associations, attendants, what is more, other treatment suppliers in utilizing Big Data advancements to anticipate and oversee cardiovascular failure just as what protection concerns face the utilization of Big Data investigation in medical care. Compelling and customized clinical treatment can be created utilizing these advances (Cheryl Ann Alexander and Lidong Wang, 2017). I have used Hadoop and Apache spark to analyze my data to map them into real data statistics and we can further use this data to make a comparison, how different health sectors are performing.

References

Analytics Vidhya (2021). Microsoft Power BI | Rise of Microsoft Power BI as a Data Analytics Tool.Analytics Vidhya.

Alvin, R., Dean, J. & Isaac, K. 2019, “Machine Learning in Medicine”, The New England journal of medicine, vol. 380, no. 14, pp. 1347-1358.

Baldominos, A., De Rada, F. and Saez, Y., 2018. DataCare: Big Data Analytics Solution for Intelligent Healthcare Management. International Journal of Interactive Multimedia & Artificial Intelligence4(7).

Cheryl Ann Alexander and Lidong Wang (2017). Big Data Analytics in Heart Attack Prediction

Dash, S., Shakyawar, S.K., Sharma, M. and Kaushik, S. (2019). Big data in healthcare: management, analysis, and future prospects. Journal of Big Data.

Health Catalyst (2014). What is the best Healthcare Data Warehouse Model for Your Organization? viewed on 4 Jun 2021 Slideshare.net

Palanisamy, V. and Thirunavukarasu, R. (2019). Implications of big data analytics in developing healthcare frameworks – A review. Journal of King Saud University – Computer and Information Sciences.

ReferralMD. (2019). Use Cases for Big Data in Healthcare.

 

 

 

 

 

 

 

 

 

 

 

 

 

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